{"id":11,"date":"2024-03-02T22:53:26","date_gmt":"2024-03-03T04:53:26","guid":{"rendered":"http:\/\/giriathrey.com\/home\/?page_id=11"},"modified":"2025-09-02T14:29:10","modified_gmt":"2025-09-02T19:29:10","slug":"publications","status":"publish","type":"page","link":"https:\/\/giriathrey.com\/home\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n
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Google Scholar Profile<\/a><\/div>\n<\/div>\n\n\n\n

2025<\/h3>\n\n\n\n
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  • Cash, C., K. Witherspoon, and G. Athrey. “How concerned should we be about broiler breeder fertility declines?” Poultry Science<\/em>.<\/li>\n\n\n\n
  • Gupta, M., M. Cilkiz, M. M. A. Ibrahim, and G. Athrey. “Gut Microbiome-Brain Crosstalk in the Early Life of Chicken Reveals the Circadian Regulation of Key Metabolic and Immune Signaling Processes.” Microorganisms<\/em>.<\/li>\n\n\n\n
  • Shahanaz, E., K. M. Zwally, C. Powers, B. Lyons, P. Kaufman, G. Athrey, and T. M. Taylor. “Flies as vectors of foodborne pathogens through food animal production: factors affecting pathogen and antimicrobial resistance transmission.” J. Food Prot.<\/em><\/li>\n\n\n\n
  • Zwally, K. M., E. Holda, I. Perez, P. E. Kaufman, B. Lyons, G. Athrey, and T. M. Taylor. “Detection and antimicrobial resistance profiles of Salmonella enterica recovered from house fly intestinal tracts and environments of selected broiler farms in Texas.” Lett. Appl. Microbiol.<\/em><\/li>\n<\/ul>\n\n\n\n

    2024<\/h3>\n\n\n\n
      \n
    • Alfieri, J. M., R. Hingoranee, G. N. Athrey, and H. Blackmon. “Domestication is Associated with Increased Interspecific Hybrid Compatibility in Landfowl (Order: Galliformes).” J. Hered.<\/em><\/li>\n\n\n\n
    • Huang, X., P. E. Kaufman, G. N. Athrey, C. Fredregill, and M. A. Slotman. “Unveiling candidate genes for metabolic resistance to malathion in Aedes albopictus through RNA sequencing-based transcriptome profiling.” PLoS Negl. Trop. Dis.<\/em><\/li>\n<\/ul>\n\n\n\n

      2023<\/h3>\n\n\n\n
        \n
      • Alfieri, J. M., T. Johnson, A. Linderholm, H. Blackmon, and G. N. Athrey. “Genomic investigation refutes record of most diverged avian hybrid.” Ecol. Evol.<\/em><\/li>\n\n\n\n
      • Fiddaman, S. R., C. Klopp, M. Charles, P. Bardou, O. Lebrasseur, M. F. L. Derks, J. Schauer, C. Reimer, J. Geibel, A. Gheyas, J. Smith, A. B. Diack, N. Anthony, A. A. Torgasheva, S. Galkina, L. M. Coghill, M. P. Stevens, S. Kemp, O. Hanotte, I. Ng’ang’a, and G. N. Athrey. “Chicken Genomic Diversity consortium: large-scale genomics to unravel the origins and adaptations of chickens.” Cytogenet. Genome Res.<\/em><\/li>\n\n\n\n
      • Huang, X., G. Athrey, P. E. Kaufman, C. Fredregill, and M. A. Slotman. “Effective population size of Culex quinquefasciatus under insecticide-based vector management and following Hurricane Harvey in Harris County, Texas.” Frontiers in Genetics<\/em>.<\/li>\n\n\n\n
      • Huang, X., P. E. Kaufman, G. N. Athrey, C. Fredregill, C. Alvarez, V. Shetty, and M. A. Slotman. “Potential key genes involved in metabolic resistance to malathion in the southern house mosquito, Culex quinquefasciatus, and functional validation of CYP325BC1 and CYP9M12 as candidate genes using RNA interference.” BMC Genomics<\/em>.<\/li>\n\n\n\n
      • Johnson, J. A., G. Athrey, C. M. Anderson, D. A. Bell, A. Dixon, Y. Kumazawa, T. Maechtle, G. W. Meeks, D. Mindell, K. Nakajima, B. Novak, S. Talbot, C. White, and X. Zhan. “Whole-genome survey reveals extensive variation in genetic diversity and inbreeding levels among peregrine falcon subspecies.” Ecol. Evol.<\/em><\/li>\n\n\n\n
      • Johnson, J. A., B. Novak, G. Athrey, A. G. Sharo, T. Chase, and J. Toepfer. “Phylogenomics of the extinct Heath Hen provides support for sex-biased introgression among extant prairie grouse.” Mol. Phylogenet. Evol.<\/em><\/li>\n\n\n\n
      • Rice, E. S., A. Alberdi, J. Alfieri, G. Athrey, J. R. Balacco, P. Bardou, H. Blackmon, M. Charles, H. H. Cheng, O. Fedrigo, S. R. Fiddaman, G. Formenti, L. Frantz, M. T. P. Gilbert, C. J. Hearn, E. D. Jarvis, C. Klopp, S. Marcos, D. Velez-Irizarry, L. Xu, and W. C. Warren. “A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants.” Res. Sq.<\/em><\/li>\n\n\n\n
      • Smith, J., J. M. Alfieri, N. Anthony, P. Arensburger, G. N. Athrey, J. Balacco, A. Balic, P. Bardou, P. Barela, Y. Bigot, H. Blackmon, P. M. Borodin, R. Carroll, M. C. Casono, M. Charles, H. Cheng, M. Chiodi, L. Cigan, L. M. Coghill, R. Crooijmans, N. Das, S. Davey, A. Davidian, F. Degalez, J. M. Dekkers, M. Derks, A. B. Diack, A. Djikeng, Y. Drechsler, A. Dyomin, O. Fedrigo, S. R. Fiddaman, G. Formenti, L. A. F. Frantz, J. E. Fulton, E. Gaginskaya, S. Galkina, R. A. Gallardo, J. Geibel, A. Gheyas, C. J. P. Godinez, A. Goodell, J. A. M. Graves, D. K. Griffin, B. Haase, J.-L. Han, O. Hanotte, L. J. Henderson, Z.-C. Hou, K. Howe, L. Huynh, E. Ilatsia, E. Jarvis, S. M. Johnson, J. Kaufman, T. Kelly, S. Kemp, C. Kern, J. H. Keroack, C. Klopp, S. Lagarrigue, S. J. Lamont, M. Lange, A. Lanke, D. M. Larkin, G. Larson, J. K. N. Layos, O. Lebrasseur, L. P. Malinovskaya, R. J. Martin, M. L. Martin Cerezo, A. S. Mason, F. M. McCarthy, M. J. McGrew, J. Mountcastle, C. K. Muhonja, W. Muir, K. Muret, T. Murphy, I. Ng\u2019ang\u2019a, M. Nishibori, R. E. O\u2019Connor, M. Ogugo, R. Okimoto, O. Ouko, H. R. Patel, F. Perini, M. I. Pigozzi, K. C. Potter, P. D. Price, C. Reimer, E. S. Rice, N. Rocos, T. F. Rogers, P. Saelao, J. Schauer, R. Schnabel, V. Schneider, H. Simianer, A. Smith, M. P. Stevens, K. Stiers, C. K. Tiambo, M. Tixier-Boichard, A. A. Torgasheva, A. Tracey, C. A. Tregaskes, L. Vervelde, Y. Wang, W. C. Warren, P. D. Waters, D. Webb, S. Weigend, A. Wolc, A. E. Wright, D. Wright, Z. Wu, M. Yamagata, C. Yang, Z.-T. Yin, M. C. Young, G. Zhang, B. Zhao, and H. Zhou. “Fourth report on chicken genes and chromosomes 2022.” Cytogenet. Genome Res.<\/em><\/li>\n<\/ul>\n\n\n\n
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        2022<\/h3>\n\n\n\n
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        • Alfieri, J. M., G. Wang, M. M. Jonika, C. A. Gill, H. Blackmon, and G. N. Athrey. “A Primer for Single-Cell Sequencing in Non-Model Organisms.” Genes<\/em>.<\/li>\n\n\n\n
        • Hubert, S., and G. Athrey. “Transcriptomic signals of mitochondrial dysfunction and OXPHOS dynamics in fast-growth chicken.” PeerJ<\/em>.<\/li>\n<\/ul>\n\n\n\n
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          2021<\/h3>\n\n\n\n
            \n
          • Hauser, S. S., G. Athrey, and P. L. Leberg. “Waste not, want not: Microsatellites remain an economical and informative technology for conservation genetics.” Ecol. Evol.<\/em><\/li>\n\n\n\n
          • Ibrahim, M. M. A., J. R. Nelson, G. S. Archer, and G. Athrey. “Effects of monochromatic lighting during incubation and vaccination on the splenic transcriptome profiles of chicken.” Front. Genet.<\/em><\/li>\n\n\n\n
          • Athrey, G., Z. R. Popkin-Hall, W. Takken, and M. A. Slotman. “The Expression of Chemosensory Genes in Male Maxillary Palps of Anopheles coluzzii (Diptera: Culicidae) and An. quadriannulatus.” J. Med. Entomol.<\/em><\/li>\n<\/ul>\n\n\n\n
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            2020<\/h3>\n\n\n\n
              \n
            • Aguirre, M. E., H. Leyva-Jimenez, R. Travis, J. Lee, G. Athrey, and C. Z. Alvarado. “Evaluation of growth production factors as predictors of the incidence and severity of white striping and woody breast in broiler chickens.” Poult. Sci.<\/em><\/li>\n\n\n\n
            • Al-Ajeeli, M. N., S. M. Hubert, H. Leyva-Jimenez, M. M. Hashim, R. A. Abdaljaleel, A. M. Alsadwi, G. Athrey, and C. A. Bailey. “Impacts of Dietary Protein and Prebiotic Inclusion on Liver and Spleen Gene Expression in Hy-Line Brown Caged Layers.” Animals (Basel)<\/em>.<\/li>\n\n\n\n
            • Athrey, G., Z. Popkin-Hall, L. V. Cosme, W. Takken, and M. A. Slotman. “Species and sex-specific chemosensory gene expression in Anopheles coluzzii and An. quadriannulatus antennae.” Parasit. Vectors<\/em>.<\/li>\n\n\n\n
            • Hubert, S. M., and G. Athrey. “Energy metabolism and sources of oxidative stress in wooden breast – a review.” F1000Res.<\/em><\/li>\n\n\n\n
            • Ma, L., H. Li, J. Hu, J. Zheng, J. Zhou, R. Botchlett, D. Matthews, T. Zeng, L. Chen, X. Xiao, G. Athrey, D. W. Threadgill, Q. Li, S. Glaser, H. Francis, F. Meng, Q. Li, G. Alpini, and C. Wu. “Indole Alleviates Diet-Induced Hepatic Steatosis and Inflammation in a Manner Involving Myeloid Cell 6-Phosphofructo-2-Kinase\/Fructose-2,6-Biphosphatase 3.” Hepatology<\/em>.<\/li>\n\n\n\n
            • Nelson, J. R., E. B. Sobotik, G. Athrey, and G. S. Archer. “Effects of supplementing yeast fermentate in the feed or drinking water on stress susceptibility, plasma chemistry, cytokine levels, antioxidant status, and stress- and immune-related gene expression of broiler chickens.” Poult. Sci.<\/em><\/li>\n\n\n\n
            • Nelson, J. R., M. Ibrahim, E. B. Sobotik, G. Athrey, and G. S. Archer. “Effects of yeast fermentate supplementation on cecal microbiome, plasma biochemistry and ileal histomorphology in stressed broiler chickens.” Livest. Sci.<\/em><\/li>\n\n\n\n
            • Williams, T., and G. Athrey. “Cloacal Swabs Are Unreliable Sources for Estimating Lower Gastro-Intestinal Tract Microbiota Membership and Structure in Broiler Chickens.” Microorganisms<\/em>.<\/li>\n<\/ul>\n\n\n\n
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              2019<\/h3>\n\n\n\n
                \n
              • Hieke, A.-S. C., S. M. Hubert, and G. Athrey. “Circadian disruption and divergent microbiota acquisition under extended photoperiod regimens in chicken.” PeerJ<\/em>.<\/li>\n\n\n\n
              • Hubert, S. M., M. Al-Ajeeli, C. A. Bailey, and G. Athrey. “The role of housing environment and dietary protein source on the gut microbiota of chicken.” Animals (Basel)<\/em>.<\/li>\n\n\n\n
              • Klerks, P. L., G. N. R. Athrey, and P. L. Leberg. “Response to selection for increased heat tolerance in a small fish species, with the response decreased by a population bottleneck.” Front. Ecol. Evol.<\/em><\/li>\n\n\n\n
              • Shivanagoudra, S. R., W. H. Perera, J. L. Perez, G. Athrey, Y. Sun, G. K. Jayaprakasha, and B. S. Patil. “Cucurbitane-type compounds from Momordica charantia: Isolation, in vitro antidiabetic, anti-inflammatory activities and in silico modeling approaches.” Bioorg. Chem.<\/em><\/li>\n\n\n\n
              • Shivanagoudra, S. R., W. H. Perera, J. L. Perez, G. Athrey, Y. Sun, C. S. Wu, G. K. Jayaprakasha, and B. S. Patil. “In vitro and in silico elucidation of antidiabetic and anti-inflammatory activities of bioactive compounds from Momordica charantia L.” Bioorg. Med. Chem.<\/em><\/li>\n<\/ul>\n\n\n\n
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                2018<\/h3>\n\n\n\n
                  \n
                • Athrey, G., N. Faust, A.-S. C. Hieke, and I. L. Brisbin. “Effective population sizes and adaptive genetic variation in a captive bird population.” PeerJ<\/em>.<\/li>\n\n\n\n
                • Levy, J., C. Tamborindeguy, G. Athrey, D. C. Scheuring, J. W. Koym, and J. C. Miller. “Transcriptome of Russet Norkotah and its clonal selection, TXNS278.” BMC Res. Notes<\/em>.<\/li>\n\n\n\n
                • Hieke, A.-S. C., S. M. Hubert, and G. Athrey. “Circadian disruption and divergent microbiota acquisition under extended photoperiods in chicken (in review).”<\/li>\n<\/ul>\n\n\n\n
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                  2017<\/h3>\n\n\n\n
                    \n
                  • Athrey, G., L. V. Cosme, Z. Popkin-Hall, S. Pathikonda, W. Takken, and M. A. Slotman. “Chemosensory gene expression in olfactory organs of the anthropophilic Anopheles coluzzii and zoophilic Anopheles quadriannulatus.” BMC Genomics<\/em>.<\/li>\n<\/ul>\n\n\n\n
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                    2016<\/h3>\n\n\n\n
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                    • Deitz, K. C., G. A. Athrey, M. Jawara, H. J. Overgaard, A. Matias, and M. A. Slotman. “Genome-Wide Divergence in the West-African Malaria Vector Anopheles melas.” G3 (Bethesda)<\/em>.<\/li>\n<\/ul>\n\n\n\n
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                      2015<\/h3>\n\n\n\n
                        \n
                      • Athrey, G., R. F. Lance, and P. L. Leberg. “Using Genealogical Mapping and Genetic Neighborhood Sizes to Quantify Dispersal Distances in the Neotropical Passerine, the Black-Capped Vireo.” PLoS ONE<\/em>.<\/li>\n<\/ul>\n\n\n\n
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                        2014<\/h3>\n\n\n\n
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                        • Hodges, T. K., L. V. Cosme, G. Athrey, S. Pathikonda, W. Takken, and M. A. Slotman. “Species-specific chemosensory gene expression in the olfactory organs of the malaria vector Anopheles gambiae.” BMC Genomics<\/em>.<\/li>\n<\/ul>\n\n\n\n
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                          2013<\/h3>\n\n\n\n
                            \n
                          • Hodges, T. K., G. Athrey, K. C. Deitz, H. J. Overgaard, A. Matias, A. Caccone, and M. A. Slotman. “Large fluctuations in the effective population size of the malaria mosquito Anopheles gambiae s.s. during vector control cycle.” Evol. Appl.<\/em><\/li>\n\n\n\n
                          • Deitz, K. C., G. Athrey, M. R. Reddy, H. J. Overgaard, A. Matias, M. Jawara, A. D. Torre, V. Petrarca, J. Pinto, A. E. Kiszewski, P. Kengne, C. Costantini, A. Caccone, and M. A. Slotman. “Genetic isolation within the malaria mosquitoAnopheles melas.” Mol. Ecol.<\/em><\/li>\n\n\n\n
                          • Walter, S. T., M. R. Carloss, T. J. Hess, G. athrey, and P. L. Leberg. “Brown Pelican (Pelecanus occidentalis) Colony Initiation Attempts: Translocations and Decoys.” Waterbirds<\/em>.<\/li>\n\n\n\n
                          • Walter, S. T., M. R. Carloss, T. J. Hess, G. Athrey, and P. L. Leberg. “Movement patterns and population structure of the brown pelican.” Condor<\/em>.<\/li>\n<\/ul>\n\n\n\n
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                            2012<\/h3>\n\n\n\n
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                            • Arges, C. G., J. Parrondo, G. Johnson, A. Nadhan, and V. Ramani. “Assessing the influence of different cation chemistries on ionic conductivity and alkaline stability of anion exchange membranes.” J. Mater. Chem.<\/em><\/li>\n\n\n\n
                            • Athrey, G., K. R. Barr, R. F. Lance, and P. L. Leberg. “Birds in space and time: genetic changes accompanying anthropogenic habitat fragmentation in the endangered black-capped vireo (Vireo atricapilla).” Evol. Appl.<\/em><\/li>\n\n\n\n
                            • Athrey, G., T. K. Hodges, M. R. Reddy, H. J. Overgaard, A. Matias, F. C. Ridl, I. Kleinschmidt, A. Caccone, and M. A. Slotman. “The effective population size of malaria mosquitoes: large impact of vector control.” PLoS Genet.<\/em><\/li>\n\n\n\n
                            • Athrey, G., R. F. Lance, and P. L. Leberg. “How far is too close? restricted, sex-biased dispersal in black-capped vireos.” Mol. Ecol.<\/em><\/li>\n\n\n\n
                            • Deitz, K. C., G. Athrey, M. R. Reddy, H. J. Overgaard, A. Matias, M. Jawara, A. Della Torre, V. Petrarca, J. Pinto, A. E. Kiszewski, P. Kengne, C. Costantini, A. Caccone, and M. A. Slotman. “Genetic isolation within the malaria mosquito Anopheles melas.” Mol. Ecol.<\/em><\/li>\n<\/ul>\n\n\n\n
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                              2011<\/h3>\n\n\n\n
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                              • Athrey, G., D. L. Lindsay, R. F. Lance, and P. L. Leberg. “Crumbling diversity: comparison of historical archived and contemporary natural populations indicate reduced genetic diversity and increasing genetic differentiation in the golden-cheeked warbler.” Conserv. Genet.<\/em><\/li>\n\n\n\n
                              • Barr, K. R., G. Athrey, D. L. Lindsay, R. F. Lance, T. J. Hayden, S. A. Tweddale, and P. L. Leberg. “Missing the forest for the gene trees: Conservation genetics is more than the identification of distinct population segments.” Auk<\/em>.<\/li>\n<\/ul>\n\n\n\n
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                                2009<\/h3>\n\n\n\n
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                                • Fike, J. A., G. Athrey, R. Bowman, P. L. Leberg, and O. E. Rhodes. “Development of twenty-five polymorphic microsatellite markers for the endangered red-cockaded woodpecker (Picoides borealis).” Conserv. Genet.<\/em><\/li>\n<\/ul>\n\n\n\n
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                                  2008<\/h3>\n\n\n\n
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                                  • Barr, K. R., D. L. Lindsay, G. Athrey, R. F. Lance, T. J. Hayden, S. A. Tweddale, and P. L. Leberg. “Population structure in an endangered songbird: maintenance of genetic differentiation despite high vagility and significant population recovery.” Mol. Ecol.<\/em><\/li>\n<\/ul>\n\n\n\n
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                                    2007<\/h3>\n\n\n\n
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                                    • Athrey, N. R. G., P. L. Leberg, and P. L. Klerks. “Laboratory culturing and selection for increased resistance to cadmium reduce genetic variation in the least killifish, Heterandria formosa.” Environ. Toxicol. Chem.<\/em><\/li>\n<\/ul>\n\n\n\n

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