Here are links to webpages that I recommend highly

Science news and views

Haldane’s Sieve

arXiv

The Molecular Ecologist

Why Evolution is True

Dynamic Ecology

Small Pond Science

Matt Might’s fascinating blog

Wisdom from the funding poobah’s

NSF DEBreif

NIH Extramural News

USDA RFA list

Next-gen Sequencing 

RNA-seqlopedia

A great NGS blog

NGS-expert

Programming/Statistics

Math for programmers

Quick-R

MIT course using Python

Links to browse in your copious spare time*

Daring Fireball

Brain Pickings

xkcd

*(copious spare time ™ of Dr. Paul L Leberg)

And lastly, a list of software I use and recommend

Desktop

Rstudio

Papers

Omnifocus

Sciwheel

Notion

Keynote

Sublime Text 2 (Absolutely love it)

Reeder

iOS

Omnifocus

Notion

Soulver

Reeder